IL_6GQ1_089

3D structure

PDB id

6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

6GQ1|1|1|A|2281, 6GQ1|1|1|C|2287, 6GQ1|1|1|C|2306

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GQ1_089 not in the Motif Atlas

Geometric match to IL_5TBW_090

Geometric discrepancy: 0.1455

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

6GQ1|1|1|C|2277
6GQ1|1|1|C|2278
6GQ1|1|1|A|2279
6GQ1|1|1|A|2280
6GQ1|1|1|A|2281
6GQ1|1|1|U|2282
6GQ1|1|1|G|2283
6GQ1|1|1|C|2284
6GQ1|1|1|C|2285
6GQ1|1|1|U|2286
6GQ1|1|1|C|2287
6GQ1|1|1|G|2288
*
6GQ1|1|1|C|2304
6GQ1|1|1|G|2305
6GQ1|1|1|C|2306
6GQ1|1|1|G|2307

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain n

60S ribosomal protein L41-B