IL_6GQ1_094
3D structure
- PDB id
- 6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.4 Å
Loop
- Sequence
- UAGU*GUGGG
- Length
- 9 nucleotides
- Bulged bases
- 6GQ1|1|1|G|2606
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GQ1_094 not in the Motif Atlas
- Geometric match to IL_3NPQ_006
- Geometric discrepancy: 0.329
- The information below is about IL_3NPQ_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_96332.5
- Basepair signature
- cWW-cWW-L-R-L-cWW-L
- Number of instances in this motif group
- 7
Unit IDs
6GQ1|1|1|U|2423
6GQ1|1|1|A|2424
6GQ1|1|1|G|2425
6GQ1|1|1|U|2426
*
6GQ1|1|1|G|2603
6GQ1|1|1|U|2604
6GQ1|1|1|G|2605
6GQ1|1|1|G|2606
6GQ1|1|1|G|2607
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain AX
- Transfer RNA; tRNA
- Chain N
- 60S ribosomal protein L15-A
- Chain o
- 60S ribosomal protein L42-A
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