3D structure

PDB id
6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.4 Å

Loop

Sequence
AUAGA*UUUAU
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6GQ1_096 not in the Motif Atlas
Homologous match to IL_8C3A_102
Geometric discrepancy: 0.5685
The information below is about IL_8C3A_102
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_90170.1
Basepair signature
cWW-L-R-L-cWW-cWW
Number of instances in this motif group
5

Unit IDs

6GQ1|1|1|A|2445
6GQ1|1|1|U|2446
6GQ1|1|1|A|2447
6GQ1|1|1|G|2448
6GQ1|1|1|A|2449
*
6GQ1|1|1|U|2497
6GQ1|1|1|U|2498
6GQ1|1|1|U|2499
6GQ1|1|1|A|2500
6GQ1|1|1|U|2501

Current chains

Chain 1
Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain r
40S ribosomal protein S1-A

Coloring options:


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