IL_6GQ1_096
3D structure
- PDB id
- 6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.4 Å
Loop
- Sequence
- AUAGA*UUUAU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GQ1_096 not in the Motif Atlas
- Homologous match to IL_8C3A_102
- Geometric discrepancy: 0.5685
- The information below is about IL_8C3A_102
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_90170.1
- Basepair signature
- cWW-L-R-L-cWW-cWW
- Number of instances in this motif group
- 5
Unit IDs
6GQ1|1|1|A|2445
6GQ1|1|1|U|2446
6GQ1|1|1|A|2447
6GQ1|1|1|G|2448
6GQ1|1|1|A|2449
*
6GQ1|1|1|U|2497
6GQ1|1|1|U|2498
6GQ1|1|1|U|2499
6GQ1|1|1|A|2500
6GQ1|1|1|U|2501
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain r
- 40S ribosomal protein S1-A
Coloring options: