IL_6GQ1_096

3D structure

PDB id

6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

AUAGA*UUUAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GQ1_096 not in the Motif Atlas

Homologous match to IL_8C3A_102

Geometric discrepancy: 0.5685

The information below is about IL_8C3A_102

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_90170.1

Basepair signature

cWW-L-R-L-cWW-cWW

Number of instances in this motif group

5

Unit IDs

6GQ1|1|1|A|2445
6GQ1|1|1|U|2446
6GQ1|1|1|A|2447
6GQ1|1|1|G|2448
6GQ1|1|1|A|2449
*
6GQ1|1|1|U|2497
6GQ1|1|1|U|2498
6GQ1|1|1|U|2499
6GQ1|1|1|A|2500
6GQ1|1|1|U|2501

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain r

40S ribosomal protein S1-A