IL_6GQ1_119

3D structure

PDB id

6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

UUUUUG*CGAAG

Length

11 nucleotides

Bulged bases

6GQ1|1|1|U|3056, 6GQ1|1|1|U|3058

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GQ1_119 not in the Motif Atlas

Homologous match to IL_5TBW_118

Geometric discrepancy: 0.2259

The information below is about IL_5TBW_118

Detailed Annotation

UAA/GAN related

Broad Annotation

UAA/GAN related

Motif group

IL_17136.4

Basepair signature

cWW-R-L-tHS-tHW-cWW

Number of instances in this motif group

18

Unit IDs

6GQ1|1|1|U|3054
6GQ1|1|1|U|3055
6GQ1|1|1|U|3056
6GQ1|1|1|U|3057
6GQ1|1|1|U|3058
6GQ1|1|1|G|3059
*
6GQ1|1|1|C|3084
6GQ1|1|1|G|3085
6GQ1|1|1|A|3086
6GQ1|1|1|A|3087
6GQ1|1|1|G|3088

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain W

60S ribosomal protein L24-A

Chain d

60S ribosomal protein L31-A