IL_6GQ1_138

3D structure

PDB id

6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

AGUCA*UAUU

Length

9 nucleotides

Bulged bases

6GQ1|1|2|C|25

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GQ1_138 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.2364

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

6GQ1|1|2|A|22
6GQ1|1|2|G|23
6GQ1|1|2|U|24
6GQ1|1|2|C|25
6GQ1|1|2|A|26
*
6GQ1|1|2|U|600
6GQ1|1|2|A|601
6GQ1|1|2|U|602
6GQ1|1|2|U|603

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AN

40S ribosomal protein S23-A

Chain z

40S ribosomal protein S9-A