IL_6GQ1_147

3D structure

PDB id

6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

GUAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6GQ1|1|2|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GQ1_147 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.2407

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

6GQ1|1|2|G|143
6GQ1|1|2|U|144
6GQ1|1|2|A|145
6GQ1|1|2|U|146
6GQ1|1|2|A|147
6GQ1|1|2|A|148
6GQ1|1|2|C|149
*
6GQ1|1|2|G|165
6GQ1|1|2|C|166
6GQ1|1|2|U|167
6GQ1|1|2|A|168
6GQ1|1|2|A|169
6GQ1|1|2|U|170
6GQ1|1|2|A|171
6GQ1|1|2|C|172

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AO

40S ribosomal protein S24-A

Chain w

40S ribosomal protein S6-A