3D structure

PDB id
6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.4 Å

Loop

Sequence
GAAAAAAUU*AUAUUAGC
Length
17 nucleotides
Bulged bases
6GQ1|1|2|U|794
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6GQ1_178 not in the Motif Atlas
Homologous match to IL_4V88_425
Geometric discrepancy: 0.4635
The information below is about IL_4V88_425
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_53064.1
Basepair signature
cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
Number of instances in this motif group
2

Unit IDs

6GQ1|1|2|G|751
6GQ1|1|2|A|752
6GQ1|1|2|A|753
6GQ1|1|2|A|754
6GQ1|1|2|A|755
6GQ1|1|2|A|756
6GQ1|1|2|A|757
6GQ1|1|2|U|758
6GQ1|1|2|U|759
*
6GQ1|1|2|A|791
6GQ1|1|2|U|792
6GQ1|1|2|A|793
6GQ1|1|2|U|794
6GQ1|1|2|U|795
6GQ1|1|2|A|796
6GQ1|1|2|G|797
6GQ1|1|2|C|798

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain AB
40S ribosomal protein S11-A
Chain AM
40S ribosomal protein S22-A
Chain u
40S ribosomal protein S4-A
Chain z
40S ribosomal protein S9-A

Coloring options:


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