IL_6GQ1_179

3D structure

PDB id

6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

ACGUUUG*CAUCGU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GQ1_179 not in the Motif Atlas

Geometric match to IL_6CZR_369

Geometric discrepancy: 0.3916

The information below is about IL_6CZR_369

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_71294.1

Basepair signature

cWW-cWW-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

6GQ1|1|2|A|817
6GQ1|1|2|C|818
6GQ1|1|2|G|819
6GQ1|1|2|U|820
6GQ1|1|2|U|821
6GQ1|1|2|U|822
6GQ1|1|2|G|823
*
6GQ1|1|2|C|849
6GQ1|1|2|A|850
6GQ1|1|2|U|851
6GQ1|1|2|C|852
6GQ1|1|2|G|853
6GQ1|1|2|U|854

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AB

40S ribosomal protein S11-A

Chain R

60S ribosomal protein L19-A

Chain x

40S ribosomal protein S7-A