IL_6GQ1_198

3D structure

PDB id

6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

GUC*GUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GQ1_198 not in the Motif Atlas

Geometric match to IL_4P3T_005

Geometric discrepancy: 0.1611

The information below is about IL_4P3T_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_10289.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

237

Unit IDs

6GQ1|1|2|G|1213
6GQ1|1|2|U|1214
6GQ1|1|2|C|1215
*
6GQ1|1|2|G|1448
6GQ1|1|2|U|1449
6GQ1|1|2|U|1450

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AA

40S ribosomal protein S10-A

Chain AF

40S ribosomal protein S15

Chain AT

40S ribosomal protein S29-A