IL_6GQ1_208

3D structure

PDB id

6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

GGUGC*GUUAUCC

Length

12 nucleotides

Bulged bases

6GQ1|1|2|U|1370, 6GQ1|1|2|A|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GQ1_208 not in the Motif Atlas

Geometric match to IL_5BTM_001

Geometric discrepancy: 0.3792

The information below is about IL_5BTM_001

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

6GQ1|1|2|G|1351
6GQ1|1|2|G|1352
6GQ1|1|2|U|1353
6GQ1|1|2|G|1354
6GQ1|1|2|C|1355
*
6GQ1|1|2|G|1368
6GQ1|1|2|U|1369
6GQ1|1|2|U|1370
6GQ1|1|2|A|1371
6GQ1|1|2|U|1372
6GQ1|1|2|C|1373
6GQ1|1|2|C|1374

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AG

40S ribosomal protein S16-A

Chain AJ

40S ribosomal protein S19-A

Chain AK

40S ribosomal protein S20