3D structure

PDB id
6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.4 Å

Loop

Sequence
CGAU*AGAG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6GQ1_219 not in the Motif Atlas
Homologous match to IL_4V88_468
Geometric discrepancy: 0.1451
The information below is about IL_4V88_468
Detailed Annotation
Double sheared
Broad Annotation
Double sheared
Motif group
IL_09705.12
Basepair signature
cWW-tSH-tHS-cWW
Number of instances in this motif group
35

Unit IDs

6GQ1|1|2|C|1653
6GQ1|1|2|G|1654
6GQ1|1|2|A|1655
6GQ1|1|2|U|1656
*
6GQ1|1|2|A|1744
6GQ1|1|2|G|1745
6GQ1|1|2|A|1746
6GQ1|1|2|G|1747

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain 1
Large subunit ribosomal RNA; LSU rRNA
Chain AN
40S ribosomal protein S23-A
Chain V
60S ribosomal protein L23-A
Chain n
60S ribosomal protein L41-B

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1233 s