IL_6GQ1_219
3D structure
- PDB id
- 6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.4 Å
Loop
- Sequence
- CGAU*AGAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GQ1_219 not in the Motif Atlas
- Homologous match to IL_4V88_468
- Geometric discrepancy: 0.1451
- The information below is about IL_4V88_468
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.12
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 35
Unit IDs
6GQ1|1|2|C|1653
6GQ1|1|2|G|1654
6GQ1|1|2|A|1655
6GQ1|1|2|U|1656
*
6GQ1|1|2|A|1744
6GQ1|1|2|G|1745
6GQ1|1|2|A|1746
6GQ1|1|2|G|1747
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain AN
- 40S ribosomal protein S23-A
- Chain V
- 60S ribosomal protein L23-A
- Chain n
- 60S ribosomal protein L41-B
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