3D structure

PDB id
6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.4 Å

Loop

Sequence
UGAG*CAAA
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6GQ1_222 not in the Motif Atlas
Homologous match to IL_4V88_471
Geometric discrepancy: 0.2021
The information below is about IL_4V88_471
Detailed Annotation
Double sheared
Broad Annotation
Double sheared
Motif group
IL_09705.12
Basepair signature
cWW-tSH-tHS-cWW
Number of instances in this motif group
35

Unit IDs

6GQ1|1|2|U|1669
6GQ1|1|2|G|1670
6GQ1|1|2|A|1671
6GQ1|1|2|G|1672
*
6GQ1|1|2|C|1729
6GQ1|1|2|A|1730
6GQ1|1|2|A|1731
6GQ1|1|2|A|1732

Current chains

Chain 2
18S ribosomal RNA

Nearby chains

Chain W
60S ribosomal protein L24-A
Chain w
40S ribosomal protein S6-A
Chain y
40S ribosomal protein S8-A

Coloring options:


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