3D structure

PDB id
6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.4 Å

Loop

Sequence
GGGGC*GUGCAC
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6GQ1_239 not in the Motif Atlas
Geometric match to IL_4V9F_018
Geometric discrepancy: 0.2923
The information below is about IL_4V9F_018
Detailed Annotation
Triple sheared related
Broad Annotation
Triple sheared
Motif group
IL_97631.1
Basepair signature
cWW-L-R-L-R-L-tHS-cWW
Number of instances in this motif group
1

Unit IDs

6GQ1|1|1|G|725
6GQ1|1|1|G|726
6GQ1|1|1|G|727
6GQ1|1|1|G|728
6GQ1|1|1|C|729
*
6GQ1|1|1|G|740
6GQ1|1|1|U|741
6GQ1|1|1|G|742
6GQ1|1|1|C|743
6GQ1|1|1|A|744
6GQ1|1|1|C|745

Current chains

Chain 1
Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain Q
60S ribosomal protein L18-A
Chain b
60S ribosomal protein L29

Coloring options:


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