IL_6GQ1_239
3D structure
- PDB id
- 6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.4 Å
Loop
- Sequence
- GGGGC*GUGCAC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GQ1_239 not in the Motif Atlas
- Geometric match to IL_4V9F_018
- Geometric discrepancy: 0.2923
- The information below is about IL_4V9F_018
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared
- Motif group
- IL_97631.1
- Basepair signature
- cWW-L-R-L-R-L-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
6GQ1|1|1|G|725
6GQ1|1|1|G|726
6GQ1|1|1|G|727
6GQ1|1|1|G|728
6GQ1|1|1|C|729
*
6GQ1|1|1|G|740
6GQ1|1|1|U|741
6GQ1|1|1|G|742
6GQ1|1|1|C|743
6GQ1|1|1|A|744
6GQ1|1|1|C|745
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain Q
- 60S ribosomal protein L18-A
- Chain b
- 60S ribosomal protein L29
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