IL_6GQ1_251
3D structure
- PDB id
- 6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.4 Å
Loop
- Sequence
- GGUC*GGAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GQ1_251 not in the Motif Atlas
- Homologous match to IL_8P9A_419
- Geometric discrepancy: 0.2136
- The information below is about IL_8P9A_419
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_85033.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
6GQ1|1|2|G|871
6GQ1|1|2|G|872
6GQ1|1|2|U|873
6GQ1|1|2|C|874
*
6GQ1|1|2|G|953
6GQ1|1|2|G|954
6GQ1|1|2|A|955
6GQ1|1|2|C|956
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain AD
- 40S ribosomal protein S13
- Chain AR
- 40S ribosomal protein S27-A
- Chain r
- 40S ribosomal protein S1-A
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