3D structure

PDB id
6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)
Experimental method
ELECTRON MICROSCOPY
Resolution
4.4 Å

Loop

Sequence
UCAAAGU*AACCAAG
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6GQ1_260 not in the Motif Atlas
Homologous match to IL_8P9A_316
Geometric discrepancy: 0.1983
The information below is about IL_8P9A_316
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_88116.2
Basepair signature
cWW-tSH-L-R-L-R-L-R-cWW-cWW
Number of instances in this motif group
3

Unit IDs

6GQ1|1|1|U|2211
6GQ1|1|1|C|2212
6GQ1|1|1|A|2213
6GQ1|1|1|A|2214
6GQ1|1|1|A|2215
6GQ1|1|1|G|2216
6GQ1|1|1|U|2217
*
6GQ1|1|1|A|2228
6GQ1|1|1|A|2229
6GQ1|1|1|C|2230
6GQ1|1|1|C|2231
6GQ1|1|1|A|2232
6GQ1|1|1|A|2233
6GQ1|1|1|G|2234

Current chains

Chain 1
Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain AX
Transfer RNA; tRNA
Chain i
60S ribosomal protein L36-A
Chain o
60S ribosomal protein L42-A

Coloring options:


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