IL_6GQB_012

3D structure

PDB id

6GQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GAC*GU

Length

5 nucleotides

Bulged bases

6GQB|1|1|A|338

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GQB_012 not in the Motif Atlas

Homologous match to IL_5TBW_013

Geometric discrepancy: 0.2439

The information below is about IL_5TBW_013

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

6GQB|1|1|G|337
6GQB|1|1|A|338
6GQB|1|1|C|339
*
6GQB|1|4|G|25
6GQB|1|4|U|26

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Chain 4

5.8S ribosomal RNA

Nearby chains

Chain C

60S ribosomal protein L4-A

Chain Y

60S ribosomal protein L26-A