IL_6GQB_016
3D structure
- PDB id
- 6GQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CAGACAUGGUGUUUUGUAUUUCACUGG*CAUAAUG
- Length
- 34 nucleotides
- Bulged bases
- 6GQB|1|1|A|438, 6GQB|1|1|U|447
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6GQB|1|1|C|435
6GQB|1|1|A|436
6GQB|1|1|G|437
6GQB|1|1|A|438
6GQB|1|1|C|439
6GQB|1|1|A|440
6GQB|1|1|U|441
6GQB|1|1|G|442
6GQB|1|1|G|443
6GQB|1|1|U|444
6GQB|1|1|G|445
6GQB|1|1|U|446
6GQB|1|1|U|447
6GQB|1|1|U|448
6GQB|1|1|U|449
6GQB|1|1|G|450
6GQB|1|1|U|451
6GQB|1|1|A|486
6GQB|1|1|U|487
6GQB|1|1|U|488
6GQB|1|1|U|489
6GQB|1|1|C|490
6GQB|1|1|A|491
6GQB|1|1|C|492
6GQB|1|1|U|493
6GQB|1|1|G|494
6GQB|1|1|G|495
*
6GQB|1|1|C|618
6GQB|1|1|A|619
6GQB|1|1|U|620
6GQB|1|1|A|621
6GQB|1|1|A|622
6GQB|1|1|U|623
6GQB|1|1|G|624
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain E
- 60S ribosomal protein L6-A
- Chain P
- 60S ribosomal protein L17-A
- Chain e
- 60S ribosomal protein L32
- Chain f
- 60S ribosomal protein L33-A
Coloring options: