IL_6GQB_018
3D structure
- PDB id
- 6GQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GGAUAAAUC*GGAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 6GQB|1|1|A|519, 6GQB|1|1|U|520
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GQB_018 not in the Motif Atlas
- Homologous match to IL_5TBW_019
- Geometric discrepancy: 0.1309
- The information below is about IL_5TBW_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74024.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
6GQB|1|1|G|517
6GQB|1|1|G|518
6GQB|1|1|A|519
6GQB|1|1|U|520
6GQB|1|1|A|521
6GQB|1|1|A|522
6GQB|1|1|A|523
6GQB|1|1|U|524
6GQB|1|1|C|525
*
6GQB|1|1|G|567
6GQB|1|1|G|568
6GQB|1|1|A|569
6GQB|1|1|A|570
6GQB|1|1|U|571
6GQB|1|1|A|572
6GQB|1|1|C|573
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4-A
- Chain F
- 60S ribosomal protein L7-A
- Chain M
- 60S ribosomal protein L14-A
- Chain S
- 60S ribosomal protein L20-A
Coloring options: