IL_6GQB_031
3D structure
- PDB id
- 6GQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UGAAG*UGGAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GQB_031 not in the Motif Atlas
- Geometric match to IL_4WF9_024
- Geometric discrepancy: 0.1249
- The information below is about IL_4WF9_024
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_15190.2
- Basepair signature
- cWW-tSH-tHS-tHS-cWW
- Number of instances in this motif group
- 24
Unit IDs
6GQB|1|1|U|834
6GQB|1|1|G|835
6GQB|1|1|A|836
6GQB|1|1|A|837
6GQB|1|1|G|838
*
6GQB|1|1|U|855
6GQB|1|1|G|856
6GQB|1|1|G|857
6GQB|1|1|A|858
6GQB|1|1|G|859
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain A
- 60S ribosomal protein L2-A
- Chain R
- 60S ribosomal protein L19-A
- Chain p
- 60S ribosomal protein L43-A
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