IL_6GQB_067

3D structure

PDB id

6GQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAUU*GUUUUC

Length

11 nucleotides

Bulged bases

6GQB|1|1|U|1626, 6GQB|1|1|U|1820, 6GQB|1|1|U|1821

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GQB|1|1|G|1623
6GQB|1|1|G|1624
6GQB|1|1|A|1625
6GQB|1|1|U|1626
6GQB|1|1|U|1627
*
6GQB|1|1|G|1817
6GQB|1|1|U|1818
6GQB|1|1|U|1819
6GQB|1|1|U|1820
6GQB|1|1|U|1821
6GQB|1|1|C|1822

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain Z

60S ribosomal protein L27-A

Chain g

60S ribosomal protein L34-A

Chain k

60S ribosomal protein L38