IL_6GQB_085

3D structure

PDB id

6GQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CCAG*CG

Length

6 nucleotides

Bulged bases

6GQB|1|1|C|2197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GQB_085 not in the Motif Atlas

Homologous match to IL_5TBW_084

Geometric discrepancy: 0.1565

The information below is about IL_5TBW_084

Detailed Annotation

Major groove intercalation

Broad Annotation

No text annotation

Motif group

IL_88739.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

6GQB|1|1|C|2196
6GQB|1|1|C|2197
6GQB|1|1|A|2198
6GQB|1|1|G|2199
*
6GQB|1|1|C|2245
6GQB|1|1|G|2246

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain 2

Small subunit ribosomal RNA; SSU rRNA

Chain A

60S ribosomal protein L2-A