IL_6GQB_089

3D structure

PDB id

6GQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUCAAAG*CCAAGC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GQB|1|1|G|2210
6GQB|1|1|U|2211
6GQB|1|1|C|2212
6GQB|1|1|A|2213
6GQB|1|1|A|2214
6GQB|1|1|A|2215
6GQB|1|1|G|2216
*
6GQB|1|1|C|2230
6GQB|1|1|C|2231
6GQB|1|1|A|2232
6GQB|1|1|A|2233
6GQB|1|1|G|2234
6GQB|1|1|C|2235

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain A

60S ribosomal protein L2-A

Chain AX

Transfer RNA; tRNA

Chain i

60S ribosomal protein L36-A