IL_6GQB_100
3D structure
- PDB id
- 6GQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- GUGUAGAAUAAG*CUAC
- Length
- 16 nucleotides
- Bulged bases
- 6GQB|1|1|U|2453, 6GQB|1|1|G|2454, 6GQB|1|1|U|2460
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6GQB|1|1|G|2452
6GQB|1|1|U|2453
6GQB|1|1|G|2454
6GQB|1|1|U|2455
6GQB|1|1|A|2456
6GQB|1|1|G|2457
6GQB|1|1|A|2458
6GQB|1|1|A|2459
6GQB|1|1|U|2460
6GQB|1|1|A|2461
6GQB|1|1|A|2462
6GQB|1|1|G|2463
*
6GQB|1|1|C|2492
6GQB|1|1|U|2493
6GQB|1|1|A|2494
6GQB|1|1|C|2495
Current chains
- Chain 1
- Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA
Nearby chains
- Chain AX
- Transfer RNA; tRNA
- Chain BA
- 60S ribosomal protein L1-A
Coloring options: