IL_6GQB_102

3D structure

PDB id

6GQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGAG*CGCCAGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GQB|1|1|G|2466
6GQB|1|1|G|2467
6GQB|1|1|A|2468
6GQB|1|1|G|2469
*
6GQB|1|1|C|2476
6GQB|1|1|G|2477
6GQB|1|1|C|2478
6GQB|1|1|C|2479
6GQB|1|1|A|2480
6GQB|1|1|G|2481
6GQB|1|1|U|2482
6GQB|1|1|G|2483
6GQB|1|1|A|2484
6GQB|1|1|A|2485
6GQB|1|1|A|2486
6GQB|1|1|U|2487
6GQB|1|1|A|2488
6GQB|1|1|C|2489

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain AX

Transfer RNA; tRNA

Chain BA

60S ribosomal protein L1-A