IL_6GQB_108

3D structure

PDB id

6GQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GG*UUC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GQB_108 not in the Motif Atlas

Homologous match to IL_5TBW_102

Geometric discrepancy: 0.1988

The information below is about IL_5TBW_102

Detailed Annotation

Major groove platform

Broad Annotation

No text annotation

Motif group

IL_48076.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

41

Unit IDs

6GQB|1|1|G|2823
6GQB|1|1|G|2824
*
6GQB|1|1|U|2865
6GQB|1|1|U|2866
6GQB|1|1|C|2867

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain I

60S ribosomal protein L10

Chain b

60S ribosomal protein L29