IL_6GQB_124

3D structure

PDB id

6GQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CU*AUUG

Length

6 nucleotides

Bulged bases

6GQB|1|1|U|3078, 6GQB|1|1|U|3079

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GQB_124 not in the Motif Atlas

Homologous match to IL_8C3A_128

Geometric discrepancy: 0.1066

The information below is about IL_8C3A_128

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

6GQB|1|1|C|3063
6GQB|1|1|U|3064
*
6GQB|1|1|A|3077
6GQB|1|1|U|3078
6GQB|1|1|U|3079
6GQB|1|1|G|3080

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain R

60S ribosomal protein L19-A

Chain d

60S ribosomal protein L31-A