IL_6GQB_162

3D structure

PDB id

6GQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUUCGA*UG

Length

8 nucleotides

Bulged bases

6GQB|1|2|U|320, 6GQB|1|2|C|321

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GQB_162 not in the Motif Atlas

Geometric match to IL_5Y58_001

Geometric discrepancy: 0.2269

The information below is about IL_5Y58_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_59877.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

6GQB|1|2|U|318
6GQB|1|2|U|319
6GQB|1|2|U|320
6GQB|1|2|C|321
6GQB|1|2|G|322
6GQB|1|2|A|323
*
6GQB|1|2|U|345
6GQB|1|2|G|346

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain AB

40S ribosomal protein S11-A

Chain y

40S ribosomal protein S8-A