IL_6GQB_175

3D structure

PDB id

6GQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUUAAAA*UC

Length

9 nucleotides

Bulged bases

6GQB|1|2|U|617, 6GQB|1|2|U|618, 6GQB|1|2|A|619

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GQB_175 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.1827

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_84476.1

Basepair signature

cWW-cWW

Number of instances in this motif group

13

Unit IDs

6GQB|1|2|G|616
6GQB|1|2|U|617
6GQB|1|2|U|618
6GQB|1|2|A|619
6GQB|1|2|A|620
6GQB|1|2|A|621
6GQB|1|2|A|622
*
6GQB|1|2|U|1104
6GQB|1|2|C|1105

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AN

40S ribosomal protein S23-A

Chain AQ

40S ribosomal protein S26-B