IL_6GQB_180

3D structure

PDB id

6GQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GCUAACCUUG*CUUGGCGAAC

Length

20 nucleotides

Bulged bases

6GQB|1|2|A|733

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GQB|1|2|G|703
6GQB|1|2|C|704
6GQB|1|2|U|705
6GQB|1|2|A|706
6GQB|1|2|A|707
6GQB|1|2|C|708
6GQB|1|2|C|709
6GQB|1|2|U|710
6GQB|1|2|U|711
6GQB|1|2|G|712
*
6GQB|1|2|C|726
6GQB|1|2|U|727
6GQB|1|2|U|728
6GQB|1|2|G|729
6GQB|1|2|G|730
6GQB|1|2|C|731
6GQB|1|2|G|732
6GQB|1|2|A|733
6GQB|1|2|A|734
6GQB|1|2|C|735

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain u

40S ribosomal protein S4-A

Chain w

40S ribosomal protein S6-A