IL_6GQB_182
3D structure
- PDB id
- 6GQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- UAC*GAAUA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GQB_182 not in the Motif Atlas
- Geometric match to IL_8VTW_093
- Geometric discrepancy: 0.3821
- The information below is about IL_8VTW_093
- Detailed Annotation
- Major groove minor groove platform with extra cWW
- Broad Annotation
- Major groove minor groove platform with extra cWW
- Motif group
- IL_63959.1
- Basepair signature
- cWW-cSH-cWW-cWW
- Number of instances in this motif group
- 18
Unit IDs
6GQB|1|2|U|745
6GQB|1|2|A|746
6GQB|1|2|C|747
*
6GQB|1|2|G|802
6GQB|1|2|A|803
6GQB|1|2|A|804
6GQB|1|2|U|805
6GQB|1|2|A|806
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain AB
- 40S ribosomal protein S11-A
- Chain AM
- 40S ribosomal protein S22-A
- Chain AN
- 40S ribosomal protein S23-A
- Chain x
- 40S ribosomal protein S7-A
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