IL_6GQB_209

3D structure

PDB id

6GQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGUGCAUGG*UCUGUGAUGCC

Length

20 nucleotides

Bulged bases

6GQB|1|2|C|1274, 6GQB|1|2|U|1432, 6GQB|1|2|G|1435

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GQB|1|2|G|1270
6GQB|1|2|G|1271
6GQB|1|2|U|1272
6GQB|1|2|G|1273
6GQB|1|2|C|1274
6GQB|1|2|A|1275
6GQB|1|2|U|1276
6GQB|1|2|G|1277
6GQB|1|2|G|1278
*
6GQB|1|2|U|1430
6GQB|1|2|C|1431
6GQB|1|2|U|1432
6GQB|1|2|G|1433
6GQB|1|2|U|1434
6GQB|1|2|G|1435
6GQB|1|2|A|1436
6GQB|1|2|U|1437
6GQB|1|2|G|1438
6GQB|1|2|C|1439
6GQB|1|2|C|1440

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AA

40S ribosomal protein S10-A

Chain AK

40S ribosomal protein S20

Chain AT

40S ribosomal protein S29-A

Chain t

40S ribosomal protein S3