IL_6GQB_219

3D structure

PDB id

6GQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GGGAUA*UUCAAC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GQB_219 not in the Motif Atlas

Homologous match to IL_4V88_462

Geometric discrepancy: 0.2252

The information below is about IL_4V88_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6GQB|1|2|G|1540
6GQB|1|2|G|1541
6GQB|1|2|G|1542
6GQB|1|2|A|1543
6GQB|1|2|U|1544
6GQB|1|2|A|1545
*
6GQB|1|2|U|1566
6GQB|1|2|U|1567
6GQB|1|2|C|1568
6GQB|1|2|A|1569
6GQB|1|2|A|1570
6GQB|1|2|C|1571

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AI

40S ribosomal protein S18-A

Chain AJ

40S ribosomal protein S19-A