IL_6GQB_223
3D structure
- PDB id
- 6GQB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.9 Å
Loop
- Sequence
- CGCU*AAAAG
- Length
- 9 nucleotides
- Bulged bases
- 6GQB|1|2|A|1755, 6GQB|1|2|A|1756
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GQB_223 not in the Motif Atlas
- Homologous match to IL_9PN5_223
- Geometric discrepancy: 0.3996
- The information below is about IL_9PN5_223
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_37443.2
- Basepair signature
- cWW-cWW-L-R-cWW
- Number of instances in this motif group
- 11
Unit IDs
6GQB|1|2|C|1644
6GQB|1|2|G|1645
6GQB|1|2|C|1646
6GQB|1|2|U|1647
*
6GQB|1|2|A|1753
6GQB|1|2|A|1754
6GQB|1|2|A|1755
6GQB|1|2|A|1756
6GQB|1|2|G|1757
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain AN
- 40S ribosomal protein S23-A
- Chain AU
- 40S ribosomal protein S30-A
- Chain AY
- Messenger RNA
- Chain AZ
- Elongation factor 2
- Chain n
- 60S ribosomal protein L41-B
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