IL_6GQB_223

3D structure

PDB id

6GQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

CGCU*AAAAG

Length

9 nucleotides

Bulged bases

6GQB|1|2|A|1755, 6GQB|1|2|A|1756

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GQB|1|2|C|1644
6GQB|1|2|G|1645
6GQB|1|2|C|1646
6GQB|1|2|U|1647
*
6GQB|1|2|A|1753
6GQB|1|2|A|1754
6GQB|1|2|A|1755
6GQB|1|2|A|1756
6GQB|1|2|G|1757

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain AN

40S ribosomal protein S23-A

Chain AU

40S ribosomal protein S30-A

Chain AY

Messenger RNA

Chain AZ

Elongation factor 2

Chain n

60S ribosomal protein L41-B