IL_6GQB_231

3D structure

PDB id

6GQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGGAU*AGAAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GQB_231 not in the Motif Atlas

Geometric match to IL_2A64_006

Geometric discrepancy: 0.1662

The information below is about IL_2A64_006

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

6GQB|1|2|A|1678
6GQB|1|2|G|1679
6GQB|1|2|G|1680
6GQB|1|2|A|1681
6GQB|1|2|U|1682
*
6GQB|1|2|A|1719
6GQB|1|2|G|1720
6GQB|1|2|A|1721
6GQB|1|2|A|1722
6GQB|1|2|U|1723

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain W

60S ribosomal protein L24-A

Chain w

40S ribosomal protein S6-A

Chain y

40S ribosomal protein S8-A