IL_6GQB_256

3D structure

PDB id

6GQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

6GQB|1|2|G|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GQB_256 not in the Motif Atlas

Homologous match to IL_8C3A_440

Geometric discrepancy: 0.2638

The information below is about IL_8C3A_440

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_22252.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L

Number of instances in this motif group

1

Unit IDs

6GQB|1|2|U|893
6GQB|1|2|U|894
6GQB|1|2|G|895
6GQB|1|2|U|896
6GQB|1|2|C|897
6GQB|1|2|A|898
6GQB|1|2|G|899
*
6GQB|1|2|C|910
6GQB|1|2|U|911
6GQB|1|2|U|912
6GQB|1|2|G|913
6GQB|1|2|G|914
6GQB|1|2|A|915
6GQB|1|2|U|916
6GQB|1|2|U|917
6GQB|1|2|U|918
6GQB|1|2|A|919

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain 1

Large subunit ribosomal RNA; LSU rRNA

Chain A

60S ribosomal protein L2-A

Chain AE

40S ribosomal protein S14-B

Chain r

40S ribosomal protein S1-A