IL_6GQB_257

3D structure

PDB id

6GQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

AGU*AUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GQB_257 not in the Motif Atlas

Geometric match to IL_1Y27_001

Geometric discrepancy: 0.1811

The information below is about IL_1Y27_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

6GQB|1|2|A|1166
6GQB|1|2|G|1167
6GQB|1|2|U|1168
*
6GQB|1|2|A|1577
6GQB|1|2|U|1578
6GQB|1|2|U|1579

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AG

40S ribosomal protein S16-A

Chain AX

Transfer RNA; tRNA

Chain v

40S ribosomal protein S5