IL_6GQB_259

3D structure

PDB id

6GQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUCUAACC*GGUAAUC

Length

15 nucleotides

Bulged bases

6GQB|1|2|U|1491, 6GQB|1|2|A|1516, 6GQB|1|2|U|1517

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GQB|1|2|G|1488
6GQB|1|2|U|1489
6GQB|1|2|C|1490
6GQB|1|2|U|1491
6GQB|1|2|A|1492
6GQB|1|2|A|1493
6GQB|1|2|C|1494
6GQB|1|2|C|1495
*
6GQB|1|2|G|1512
6GQB|1|2|G|1513
6GQB|1|2|U|1514
6GQB|1|2|A|1515
6GQB|1|2|A|1516
6GQB|1|2|U|1517
6GQB|1|2|C|1518

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AJ

40S ribosomal protein S19-A

Chain AK

40S ribosomal protein S20

Chain AT

40S ribosomal protein S29-A

Chain t

40S ribosomal protein S3