IL_6GQB_266

3D structure

PDB id

6GQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GA*UUU

Length

5 nucleotides

Bulged bases

6GQB|1|2|U|959

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GQB_266 not in the Motif Atlas

Geometric match to IL_7KVT_002

Geometric discrepancy: 0.2434

The information below is about IL_7KVT_002

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

6GQB|1|2|G|868
6GQB|1|2|A|869
*
6GQB|1|2|U|958
6GQB|1|2|U|959
6GQB|1|2|U|960

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AD

40S ribosomal protein S13

Chain AR

40S ribosomal protein S27-A