IL_6GQB_268

3D structure

PDB id

6GQB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GDP+AlF4/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.9 Å

Loop

Sequence

GUGC*GUUAUC

Length

10 nucleotides

Bulged bases

6GQB|1|2|U|1370, 6GQB|1|2|A|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GQB|1|2|G|1352
6GQB|1|2|U|1353
6GQB|1|2|G|1354
6GQB|1|2|C|1355
*
6GQB|1|2|G|1368
6GQB|1|2|U|1369
6GQB|1|2|U|1370
6GQB|1|2|A|1371
6GQB|1|2|U|1372
6GQB|1|2|C|1373

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AG

40S ribosomal protein S16-A

Chain AJ

40S ribosomal protein S19-A

Chain AK

40S ribosomal protein S20