IL_6GQV_001
3D structure
- PDB id
- 6GQV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CCU*AGCG
- Length
- 7 nucleotides
- Bulged bases
- 6GQV|1|4|C|151
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GQV_001 not in the Motif Atlas
- Homologous match to IL_8C3A_001
- Geometric discrepancy: 0.5825
- The information below is about IL_8C3A_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6GQV|1|1|C|7
6GQV|1|1|C|8
6GQV|1|1|U|9
*
6GQV|1|4|A|149
6GQV|1|4|G|150
6GQV|1|4|C|151
6GQV|1|4|G|152
Current chains
- Chain 1
- 25S ribosomal RNA
- Chain 4
- 5.8S ribosomal RNA
Nearby chains
- Chain G
- 60S ribosomal protein L8-A
- Chain N
- 60S ribosomal protein L15-A
- Chain X
- 60S ribosomal protein L25
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