IL_6GQV_062

3D structure

PDB id

6GQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UCUUC*GGAAUA

Length

11 nucleotides

Bulged bases

6GQV|1|1|U|1629, 6GQV|1|1|U|1815

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GQV_062 not in the Motif Atlas

Geometric match to IL_5TBW_066

Geometric discrepancy: 0.2914

The information below is about IL_5TBW_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_48431.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

6GQV|1|1|U|1627
6GQV|1|1|C|1628
6GQV|1|1|U|1629
6GQV|1|1|U|1630
6GQV|1|1|C|1631
*
6GQV|1|1|G|1811
6GQV|1|1|G|1812
6GQV|1|1|A|1813
6GQV|1|1|A|1814
6GQV|1|1|U|1815
6GQV|1|1|A|1816

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain Z

60S ribosomal protein L27-A