IL_6GQV_139

3D structure

PDB id

6GQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

6GQV|1|2|U|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GQV_139 not in the Motif Atlas

Homologous match to IL_4V88_394

Geometric discrepancy: 0.2488

The information below is about IL_4V88_394

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.3

Basepair signature

cWW-cWW-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

6GQV|1|2|G|143
6GQV|1|2|U|144
6GQV|1|2|A|145
6GQV|1|2|U|146
6GQV|1|2|A|147
6GQV|1|2|A|148
6GQV|1|2|C|149
*
6GQV|1|2|G|165
6GQV|1|2|C|166
6GQV|1|2|U|167
6GQV|1|2|A|168
6GQV|1|2|A|169
6GQV|1|2|U|170
6GQV|1|2|A|171
6GQV|1|2|C|172

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AO

40S ribosomal protein S24-A

Chain w

40S ribosomal protein S6-A