IL_6GQV_183

3D structure

PDB id

6GQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGAGUAUG*UGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GQV_183 not in the Motif Atlas

Homologous match to IL_4V88_440

Geometric discrepancy: 0.1268

The information below is about IL_4V88_440

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.1

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

5

Unit IDs

6GQV|1|2|G|1111
6GQV|1|2|G|1112
6GQV|1|2|A|1113
6GQV|1|2|G|1114
6GQV|1|2|U|1115
6GQV|1|2|A|1116
6GQV|1|2|U|1117
6GQV|1|2|G|1118
*
6GQV|1|2|U|1129
6GQV|1|2|G|1130
6GQV|1|2|A|1131
6GQV|1|2|A|1132
6GQV|1|2|A|1133
6GQV|1|2|C|1134

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AN

40S ribosomal protein S23-A

Chain n

60S ribosomal protein L41-B