IL_6GQV_196

3D structure

PDB id

6GQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UGG*CGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GQV_196 not in the Motif Atlas

Homologous match to IL_4V88_453

Geometric discrepancy: 0.2337

The information below is about IL_4V88_453

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

48

Unit IDs

6GQV|1|2|U|1290
6GQV|1|2|G|1291
6GQV|1|2|G|1292
*
6GQV|1|2|C|1323
6GQV|1|2|G|1324
6GQV|1|2|A|1325

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AH

40S ribosomal protein S17-B

Chain q

40S ribosomal protein S0-A

Chain s

40S ribosomal protein S2

Chain t

40S ribosomal protein S3