IL_6GQV_240

3D structure

PDB id

6GQV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM recosntruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CGG*UUUG

Length

7 nucleotides

Bulged bases

6GQV|1|1|U|3382

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GQV_240 not in the Motif Atlas

Geometric match to IL_7DLZ_003

Geometric discrepancy: 0.2614

The information below is about IL_7DLZ_003

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

6GQV|1|1|C|3324
6GQV|1|1|G|3325
6GQV|1|1|G|3326
*
6GQV|1|1|U|3380
6GQV|1|1|U|3381
6GQV|1|1|U|3382
6GQV|1|1|G|3383

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain d

60S ribosomal protein L31-A