IL_6GSJ_018
3D structure
- PDB id
- 6GSJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAThr in the A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.96 Å
Loop
- Sequence
- GGACG*CGGUAC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GSJ_018 not in the Motif Atlas
- Homologous match to IL_6CZR_130
- Geometric discrepancy: 0.1512
- The information below is about IL_6CZR_130
- Detailed Annotation
- 6x5 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_88269.3
- Basepair signature
- cWW-L-R-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
6GSJ|1|13|G|446
6GSJ|1|13|G|447
6GSJ|1|13|A|448
6GSJ|1|13|C|449
6GSJ|1|13|G|450
*
6GSJ|1|13|C|483
6GSJ|1|13|G|484
6GSJ|1|13|G|485
6GSJ|1|13|U|486
6GSJ|1|13|A|487
6GSJ|1|13|C|488
Current chains
- Chain 13
- 16S ribosomal RNA
Nearby chains
- Chain 3E
- 30S ribosomal protein S4
- Chain 7I
- 30S ribosomal protein S16
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