IL_6GSJ_215

3D structure

PDB id

6GSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

CG*CUG

Length

5 nucleotides

Bulged bases

6GSJ|1|1G|U|1196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSJ_215 not in the Motif Atlas

Homologous match to IL_6CZR_156

Geometric discrepancy: 0.2066

The information below is about IL_6CZR_156

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

6GSJ|1|1G|C|1060
6GSJ|1|1G|G|1061
*
6GSJ|1|1G|C|1195
6GSJ|1|1G|U|1196
6GSJ|1|1G|G|1197

Current chains

Chain 1G

16S ribosomal RNA

Nearby chains

Chain 1A

30S ribosomal protein S10

Chain 1L

Transfer RNA; tRNA

Chain 22

30S ribosomal protein S3

Chain 42

30S ribosomal protein S5

Chain 4L

RNA (27-MER)

Chain 5A

30S ribosomal protein S14 type Z