IL_6GSJ_360

3D structure

PDB id

6GSJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

2.96 Å

Loop

Sequence

CGCUGAC*GGUGGAG

Length

14 nucleotides

Bulged bases

6GSJ|1|1H|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSJ_360 not in the Motif Atlas

Homologous match to IL_9DFE_024

Geometric discrepancy: 0.1325

The information below is about IL_9DFE_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68243.1

Basepair signature

cWW-L-cWW-cWW-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6GSJ|1|1H|C|844
6GSJ|1|1H|G|845
6GSJ|1|1H|C|846
6GSJ|1|1H|U|847
6GSJ|1|1H|G|848
6GSJ|1|1H|A|849
6GSJ|1|1H|C|850
*
6GSJ|1|1H|G|928
6GSJ|1|1H|G|929
6GSJ|1|1H|U|930
6GSJ|1|1H|G|931
6GSJ|1|1H|G|932
6GSJ|1|1H|A|933
6GSJ|1|1H|G|934

Current chains

Chain 1H

23S ribosomal RNA

Nearby chains

Chain L8

50S ribosomal protein L30