IL_6GSK_011
3D structure
- PDB id
- 6GSK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.36 Å
Loop
- Sequence
- CAUCAG*CGACGACG
- Length
- 14 nucleotides
- Bulged bases
- 6GSK|1|13|U|244, 6GSK|1|13|C|280
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GSK_011 not in the Motif Atlas
- Homologous match to IL_6CZR_123
- Geometric discrepancy: 0.1038
- The information below is about IL_6CZR_123
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.2
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
6GSK|1|13|C|242
6GSK|1|13|A|243
6GSK|1|13|U|244
6GSK|1|13|C|245
6GSK|1|13|A|246
6GSK|1|13|G|247
*
6GSK|1|13|C|277
6GSK|1|13|G|278
6GSK|1|13|A|279
6GSK|1|13|C|280
6GSK|1|13|G|281
6GSK|1|13|A|282
6GSK|1|13|C|283
6GSK|1|13|G|284
Current chains
- Chain 13
- 16S ribosomal RNA
Nearby chains
- Chain 3I
- 30S ribosomal protein S12
- Chain 8I
- 30S ribosomal protein S17
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