IL_6GSK_037

3D structure

PDB id

6GSK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of T. thermophilus 70S ribosome complex with mRNA, tRNAfMet and near-cognate tRNAThr in the A-site

Experimental method

X-RAY DIFFRACTION

Resolution

3.36 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GSK_037 not in the Motif Atlas

Homologous match to IL_4LFB_038

Geometric discrepancy: 0.1244

The information below is about IL_4LFB_038

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_51454.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

45

Unit IDs

6GSK|1|13|G|953
6GSK|1|13|G|954
*
6GSK|1|13|C|1226
6GSK|1|13|A|1227
6GSK|1|13|C|1228

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 1K

Transfer RNA; tRNA

Chain 2K

Transfer RNA; tRNA

Chain 4I

30S ribosomal protein S13

Chain AI

30S ribosomal protein S19